I'd like to lay in my opinions against Soulless' here and say that
a) 'Best practice' is definitely correct and 'the best practice' is incorrect in this instance - they have subtly different meanings and should be used in slightly different contexts
b) A comma is not necessary where you have indicated, and 'authorised' is a perfectly legitimate spelling of the word
c) Methods of dealing with affected individuals are very much part of containment when the SCP is a phenomenon which affects large numbers of people
d) Agree with you about the redundancy in your penultimate point
e) I don't really think collapsing the logs is necessary. They're such an integral part of the piece. I think collapsing them will (incorrectly) project that all-too-familiar twist incoming feeling.